Error checks and plotting speedups for dive_phe2mash function
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25
NAMESPACE
25
NAMESPACE
@@ -11,25 +11,44 @@ export(dive_phe2mash)
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export(enquo)
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export(enquos)
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export(expr)
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export(get_GxE)
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export(get_U_by_mass)
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export(get_lambdagc)
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export(get_pairwise_sharing)
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export(get_qqplot)
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export(get_significant_results)
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export(mash_plot_Ulist)
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export(mash_plot_covar)
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export(mash_plot_manhattan_by_condition)
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export(mash_plot_marker_effect)
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export(mash_plot_pairwise_sharing)
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export(mash_plot_sig_by_condition)
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export(sym)
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export(syms)
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import(bigsnpr)
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import(bigstatsr)
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import(ggplot2)
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import(mashr)
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importFrom(GGally,ggcorr)
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importFrom(ashr,get_fitted_g)
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importFrom(ashr,get_lfsr)
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importFrom(ashr,get_pm)
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importFrom(ashr,get_psd)
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importFrom(bigassertr,printf)
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importFrom(bigsnpr,snp_autoSVD)
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importFrom(cluster,daisy)
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importFrom(cowplot,save_plot)
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importFrom(dplyr,arrange)
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importFrom(dplyr,between)
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importFrom(dplyr,case_when)
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importFrom(dplyr,desc)
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importFrom(dplyr,filter)
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importFrom(dplyr,full_join)
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importFrom(dplyr,group_by)
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importFrom(dplyr,left_join)
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importFrom(dplyr,mutate)
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importFrom(dplyr,mutate_if)
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importFrom(dplyr,n)
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importFrom(dplyr,rename)
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importFrom(dplyr,select)
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importFrom(dplyr,slice)
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@@ -52,11 +71,15 @@ importFrom(rlang,enquos)
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importFrom(rlang,expr)
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importFrom(rlang,sym)
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importFrom(rlang,syms)
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importFrom(rlist,list.append)
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importFrom(stats,hclust)
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importFrom(stats,median)
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importFrom(stats,ppoints)
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importFrom(stats,predict)
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importFrom(stats,qbeta)
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importFrom(stats,uniroot)
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importFrom(stringr,str_replace)
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importFrom(stringr,str_replace_all)
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importFrom(tibble,add_column)
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importFrom(tibble,add_row)
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importFrom(tibble,as_tibble)
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@@ -64,6 +87,8 @@ importFrom(tibble,enframe)
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importFrom(tibble,rownames_to_column)
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importFrom(tibble,tibble)
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importFrom(tidyr,gather)
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importFrom(tidyr,pivot_longer)
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importFrom(tidyr,replace_na)
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importFrom(tidyr,separate)
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importFrom(tidyselect,all_of)
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importFrom(utils,tail)
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