Error checks and plotting speedups for dive_phe2mash function

man/mash_plot_covar.Rd

@@ -0,0 +1,27 @@
+% Generated by roxygen2: do not edit by hand
+% Please edit documentation in R/mash-evaluation.R
+\name{mash_plot_covar}
+\alias{mash_plot_covar}
+\title{ggplot of covariance matrix masses}
+\usage{
+mash_plot_covar(m, saveoutput = FALSE, suffix = "")
+}
+\arguments{
+\item{m}{An object of type mash}
+
+\item{saveoutput}{Logical. Should the output be saved to the path?}
+
+\item{suffix}{Character. Optional. A unique suffix used to save the files,
+instead of the current date & time.}
+}
+\description{
+Creates a bar plot using ggplot of the masses that are on each
+covariance matrix specified in the mash model.
+}
+\note{
+This plot can be useful for seeing the overall patterns of effects in
+the data used in mash. Non-significant effects will add mass to the
+"no_effects" covariance matrix, while significant effects will add mass
+to one of the other covariance matrices. You can use mash_plot_Ulist()
+to plot the covariance matrix patterns themselves.
+}