Error checks and plotting speedups for dive_phe2mash function

man/mash_plot_sig_by_condition.Rd

@@ -0,0 +1,40 @@
+% Generated by roxygen2: do not edit by hand
+% Please edit documentation in R/mash-evaluation.R
+\name{mash_plot_sig_by_condition}
+\alias{mash_plot_sig_by_condition}
+\title{Significant SNPs per number of conditions}
+\usage{
+mash_plot_sig_by_condition(
+  m,
+  conditions = NA,
+  saveoutput = FALSE,
+  suffix = "",
+  thresh = 0.05
+)
+}
+\arguments{
+\item{m}{An object of type mash}
+
+\item{conditions}{A vector of conditions. Get these with get_colnames(m).}
+
+\item{saveoutput}{Logical. Save plot output to a file? Default is FALSE.}
+
+\item{suffix}{Character. Optional. A unique suffix used to save the files,
+instead of the current date & time.}
+
+\item{thresh}{What is the threshold to call an effect significant? Default
+is 0.05.}
+}
+\value{
+A list containing a dataframe of the number of SNPs significant per
+number of conditions, and a ggplot object using that dataframe.
+}
+\description{
+For some number of columns in a mash object that correspond to
+conditions, find the number of SNPs that are significant for that number
+of conditions.
+}
+\examples{
+  \dontrun{mash_plot_sig_by_condition(m = mash_obj, saveoutput = TRUE)}
+
+}