41 lines
1.1 KiB
R
41 lines
1.1 KiB
R
% Generated by roxygen2: do not edit by hand
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% Please edit documentation in R/mash-evaluation.R
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\name{mash_plot_sig_by_condition}
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\alias{mash_plot_sig_by_condition}
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\title{Significant SNPs per number of conditions}
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\usage{
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mash_plot_sig_by_condition(
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m,
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conditions = NA,
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saveoutput = FALSE,
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suffix = "",
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thresh = 0.05
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)
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}
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\arguments{
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\item{m}{An object of type mash}
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\item{conditions}{A vector of conditions. Get these with get_colnames(m).}
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\item{saveoutput}{Logical. Save plot output to a file? Default is FALSE.}
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\item{suffix}{Character. Optional. A unique suffix used to save the files,
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instead of the current date & time.}
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\item{thresh}{What is the threshold to call an effect significant? Default
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is 0.05.}
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}
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\value{
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A list containing a dataframe of the number of SNPs significant per
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number of conditions, and a ggplot object using that dataframe.
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}
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\description{
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For some number of columns in a mash object that correspond to
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conditions, find the number of SNPs that are significant for that number
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of conditions.
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}
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\examples{
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\dontrun{mash_plot_sig_by_condition(m = mash_obj, saveoutput = TRUE)}
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}
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