Add method to remove a well from the SequenceRecord (git committed as past self due to IDE misclick)
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@@ -39,6 +39,11 @@ public class SequenceRecord implements Serializable {
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wells.put(wellNumber, readCount);
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wells.put(wellNumber, readCount);
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}
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}
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//Method to remove a well from the occupancy map.
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//Useful for cases where one sequence is misread as another sequence that isn't actually present in the well
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//This can reveal itself as an anomalously low read count in that well.
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public void deleteWell(Integer wellNumber) { wells.remove(wellNumber); }
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public Set<Integer> getWells() {
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public Set<Integer> getWells() {
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return wells.keySet();
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return wells.keySet();
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}
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}
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