diff --git a/out/artifacts/TCellSim_jar/TCellSim.jar b/out/artifacts/TCellSim_jar/TCellSim.jar
index 8fa4e30..4c9b32b 100644
Binary files a/out/artifacts/TCellSim_jar/TCellSim.jar and b/out/artifacts/TCellSim_jar/TCellSim.jar differ
diff --git a/src/main/java/Simulator.java b/src/main/java/Simulator.java
index 0befa2b..73c7767 100644
--- a/src/main/java/Simulator.java
+++ b/src/main/java/Simulator.java
@@ -163,7 +163,16 @@ public class Simulator {
         Map<Integer, Integer> betaWellCounts = data.getBetaWellCounts();
         SimpleWeightedGraph<Integer, DefaultWeightedEdge> graph = data.getGraph();
 
+        //Filter by overlap size
+        if(verbose){System.out.println("Eliminating edges with weights much less than occupancy values");}
+        filterByOverlapSize(graph, alphaWellCounts, betaWellCounts, plateVtoAMap, plateVtoBMap, minOverlapPercent);
+        if(verbose){System.out.println("Edges with weights much less than occupancy values set to 0.0");}
 
+        //Filter by relative occupancy
+        if(verbose){System.out.println("Eliminating edges between vertices of massively different occupancy");}
+        filterByRelativeOccupancy(graph, alphaWellCounts, betaWellCounts, plateVtoAMap, plateVtoBMap,
+                maxOccupancyDifference);
+        if(verbose){System.out.println("Edges between vertices of massively different occupancy set to 0.0");}
         //Find Maximum Weighted Matching
 
 //        if(verbose){System.out.println("Finding maximum weighted matching");}
@@ -361,7 +370,6 @@ public class Simulator {
         if(verbose){System.out.println("Over- and under-weight edges set to 0.0");}
 
 
-
         //Filter by overlap size
         if(verbose){System.out.println("Eliminating edges with weights much less than occupancy values");}
         filterByOverlapSize(graph, alphaWellCounts, betaWellCounts, plateVtoAMap, plateVtoBMap, minOverlapPercent);