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placeholder values until CLI is updated to support read depth simulation

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eugenefischer
2022-09-26 19:43:29 -05:00
parent 199c81f983
commit 13a1af1f71
1 changed files with 1 additions and 1 deletions
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src/main/java/CommandLineInterface.java
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@@ -146,7 +146,7 @@ public class CommandLineInterface {
CellSample cells = getCells(cellFilename); CellSample cells = getCells(cellFilename);
//get plate //get plate
Plate plate = getPlate(plateFilename); Plate plate = getPlate(plateFilename);
GraphWithMapData graph = Simulator.makeGraph(cells, plate, false); GraphWithMapData graph = Simulator.makeGraph(cells, plate, 1, 0.0, 0.0, false);
if (!line.hasOption("no-binary")) { //output binary file unless told not to if (!line.hasOption("no-binary")) { //output binary file unless told not to
GraphDataObjectWriter writer = new GraphDataObjectWriter(outputFilename, graph, false); GraphDataObjectWriter writer = new GraphDataObjectWriter(outputFilename, graph, false);
writer.writeDataToFile(); writer.writeDataToFile();