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update readme

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efischer
2022-03-01 08:54:32 -06:00
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@@ -203,9 +203,13 @@ Options for creating a Graph/Data file:
These files do not have a human-readable structure, and are not portable to other programs. These files do not have a human-readable structure, and are not portable to other programs.
(For portability to other software, turn on GraphML output in the Options menu in interactive mode, or use the `-graphml` *Optional GraphML output*
command line argument. This will produce a .graphml file for the weighted graph, with
vertex attributes for sequence, type, and occupancy data.) For portability of graph data to other software, turn on [GraphML](http://graphml.graphdrawing.org/index.html) output
in the Options menu in interactive mode, or use the `-graphml`command line argument. This will produce a .graphml file
for the weighted graph, with vertex attributes for sequence, type, and occupancy data. This graph contains all the data
necessary for the BiGpairSEQ matching algorithm. It does not include the data to measure pairing accuracy; for that,
compare the matching results to the original Cell Sample .csv file.
--- ---