From 1971a964674e8685a21d2ad2120e4bb486515750 Mon Sep 17 00:00:00 2001
From: eugenefischer <66030419+eugenefischer@users.noreply.github.com>
Date: Sun, 25 Sep 2022 14:55:43 -0500
Subject: [PATCH] Remove pre-filtering of singleton and saturating sequences

---
 src/main/java/Simulator.java | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/src/main/java/Simulator.java b/src/main/java/Simulator.java
index 6ba2cbf..5deac67 100644
--- a/src/main/java/Simulator.java
+++ b/src/main/java/Simulator.java
@@ -48,9 +48,9 @@ public class Simulator implements GraphModificationFunctions {
         if(verbose){System.out.println("Well maps made");}
 
 
-        if(verbose){System.out.println("Removing singleton sequences and sequences present in all wells.");}
-        filterByOccupancyThresholds(allAlphas, 2, numWells - 1);
-        filterByOccupancyThresholds(allBetas, 2, numWells - 1);
+        //if(verbose){System.out.println("Removing singleton sequences and sequences present in all wells.");}
+        //filterByOccupancyThresholds(allAlphas, 2, numWells - 1);
+        //filterByOccupancyThresholds(allBetas, 2, numWells - 1);
         if(verbose){System.out.println("Sequences removed");}
         int pairableAlphaCount = allAlphas.size();
         if(verbose){System.out.println("Remaining alphas count: " + pairableAlphaCount);}