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Implement read count for vertices

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eugenefischer
2022-09-26 19:42:19 -05:00
parent 19a2a35f07
commit 199c81f983
6 changed files with 93 additions and 15 deletions
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5
src/main/java/GraphWithMapData.java
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@@ -15,6 +15,7 @@ public class GraphWithMapData implements java.io.Serializable {
private Integer[] wellPopulations;
private Integer alphaCount;
private Integer betaCount;
private int readDepth;
private final Map<String, String> distCellsMapAlphaKey;
// private final Map<Integer, Integer> plateVtoAMap;
// private final Map<Integer, Integer> plateVtoBMap;
@@ -25,7 +26,7 @@ public class GraphWithMapData implements java.io.Serializable {
private final Duration time;
public GraphWithMapData(SimpleWeightedGraph graph, Integer numWells, Integer[] wellConcentrations,
Map<String, String> distCellsMapAlphaKey, Integer alphaCount, Integer betaCount, Duration time){
Map<String, String> distCellsMapAlphaKey, Integer alphaCount, Integer betaCount, int readDepth, Duration time){
// Map<Integer, Integer> plateVtoAMap,
// Map<Integer,Integer> plateVtoBMap, Map<Integer, Integer> plateAtoVMap,
@@ -94,6 +95,8 @@ public class GraphWithMapData implements java.io.Serializable {
// return betaWellCounts;
// }
public int getReadDepth() { return readDepth; }
public Duration getTime() {
return time;
}