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Add exception handling

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eugenefischer
2022-09-26 14:28:35 -05:00
parent e795b4cdd0
commit 1ddac63b0a
1 changed files with 6 additions and 0 deletions
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6
src/main/java/InteractiveInterface.java
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@@ -275,10 +275,16 @@ public class InteractiveInterface {
readDepth = sc.nextInt(); readDepth = sc.nextInt();
System.out.print("\nPlease enter probability of a sequence read error (0.0 to 1.0): "); System.out.print("\nPlease enter probability of a sequence read error (0.0 to 1.0): ");
readErrorRate = sc.nextDouble(); readErrorRate = sc.nextDouble();
if(readErrorRate < 0.0 || readErrorRate > 1.0) {
throw new InputMismatchException("The read error rate must be in the range [0.0, 1.0]");
}
System.out.println("\nPlease enter the probability of read error collision"); System.out.println("\nPlease enter the probability of read error collision");
System.out.println("(the likelihood that two read errors produce the same spurious sequence)"); System.out.println("(the likelihood that two read errors produce the same spurious sequence)");
System.out.print("(0.0 to 1.0): "); System.out.print("(0.0 to 1.0): ");
errorCollisionRate = sc.nextDouble(); errorCollisionRate = sc.nextDouble();
if(errorCollisionRate < 0.0 || errorCollisionRate > 1.0) {
throw new InputMismatchException("The error collision rate must be in the range [0.0, 1.0]");
}
} }
System.out.println("\nThe graph and occupancy data will be written to a file."); System.out.println("\nThe graph and occupancy data will be written to a file.");
System.out.print("Please enter a name for the output file: "); System.out.print("Please enter a name for the output file: ");