Add exception handling
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@@ -275,10 +275,16 @@ public class InteractiveInterface {
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readDepth = sc.nextInt();
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System.out.print("\nPlease enter probability of a sequence read error (0.0 to 1.0): ");
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readErrorRate = sc.nextDouble();
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if(readErrorRate < 0.0 || readErrorRate > 1.0) {
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throw new InputMismatchException("The read error rate must be in the range [0.0, 1.0]");
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}
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System.out.println("\nPlease enter the probability of read error collision");
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System.out.println("(the likelihood that two read errors produce the same spurious sequence)");
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System.out.print("(0.0 to 1.0): ");
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errorCollisionRate = sc.nextDouble();
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if(errorCollisionRate < 0.0 || errorCollisionRate > 1.0) {
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throw new InputMismatchException("The error collision rate must be in the range [0.0, 1.0]");
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}
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}
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System.out.println("\nThe graph and occupancy data will be written to a file.");
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System.out.print("Please enter a name for the output file: ");
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