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parameterized sequence indices

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efischer
2022-03-05 12:02:58 -06:00
parent 96ba57d653
commit 1df86f01df
1 changed files with 2 additions and 1 deletions
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src/main/java/Simulator.java
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@@ -23,6 +23,7 @@ public class Simulator implements GraphModificationFunctions {
private static final int cdr1AlphaIndex = 2; private static final int cdr1AlphaIndex = 2;
private static final int cdr1BetaIndex = 3; private static final int cdr1BetaIndex = 3;
//Make the graph needed for matching CDR3s //Make the graph needed for matching CDR3s
public static GraphWithMapData makeGraph(CellSample cellSample, Plate samplePlate, boolean verbose) { public static GraphWithMapData makeGraph(CellSample cellSample, Plate samplePlate, boolean verbose) {
Instant start = Instant.now(); Instant start = Instant.now();
@@ -34,7 +35,7 @@ public class Simulator implements GraphModificationFunctions {
if(verbose){System.out.println("Making cell maps");} if(verbose){System.out.println("Making cell maps");}
//HashMap keyed to Alphas, values Betas //HashMap keyed to Alphas, values Betas
Map<Integer, Integer> distCellsMapAlphaKey = makeSequenceToSequenceMap(distinctCells, 0, 1); Map<Integer, Integer> distCellsMapAlphaKey = makeSequenceToSequenceMap(distinctCells, cdr3AlphaIndex, cdr3BetaIndex);
if(verbose){System.out.println("Cell maps made");} if(verbose){System.out.println("Cell maps made");}
if(verbose){System.out.println("Making well maps");} if(verbose){System.out.println("Making well maps");}