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Cleanup file output, add UI verbosity

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efischer
2022-02-20 18:31:31 -06:00
parent 405fbf17ff
commit 2023bb9d7e
5 changed files with 63 additions and 39 deletions
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readme.md
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@@ -190,24 +190,28 @@ Example output:
---
```
# T cell counts in sample plate wells: 5000
# Total alphas found: 3387
# Total betas found: 3396
# Source Sample Plate file: 4MilCellsPlate.csv
# Source Graph and Data file: 4MilCellsPlateGraph.ser
# T cell counts in sample plate wells: 30000
# Total alphas found: 11813
# Total betas found: 11808
# High overlap threshold: 94
# Low overlap threshold: 3
# Minimum overlap percent: 0
# Maximum occupancy difference: 50
# Pairing attempt rate: 0.488
# Correct pairings: 1650
# Incorrect pairings: 4
# Pairing error rate: 0.00242
# Simulation time: 19 seconds
# Maximum occupancy difference: 96
# Pairing attempt rate: 0.438
# Correct pairings: 5151
# Incorrect pairings: 18
# Pairing error rate: 0.00348
# Simulation time: 862 seconds
```
| Alpha | Alpha well count | Beta | Beta well count | Overlap count | Matched Correctly? | P-value |
|---|---|---|---|---|---|---|
|716809|31|20739|34|31.0|TRUE|4.99E-25|
|753685|28|733213|27|27.0|TRUE|5.26E-23|
|5242972|17|1571520|18|17|true|1.41E-18|
|5161027|18|2072219|18|18|true|7.31E-20|
|4145198|33|1064455|30|29|true|2.65E-21|
|7700582|18|112748|18|18|true|7.31E-20|
|...|...|...|...|...|...|...|
---