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Cleanup file output, add UI verbosity

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efischer
2022-02-20 18:31:31 -06:00
parent 405fbf17ff
commit 2023bb9d7e
5 changed files with 63 additions and 39 deletions
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8
src/main/java/Simulator.java
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@@ -138,9 +138,9 @@ public class Simulator {
}
//match CDR3s.
public static MatchingResult matchCDR3s(GraphWithMapData data, Integer lowThreshold, Integer highThreshold,
Integer maxOccupancyDifference, Integer minOverlapPercent,
boolean verbose) {
public static MatchingResult matchCDR3s(GraphWithMapData data, String dataFilename, Integer lowThreshold,
Integer highThreshold, Integer maxOccupancyDifference,
Integer minOverlapPercent, boolean verbose) {
Instant start = Instant.now();
int numWells = data.getNumWells();
Integer alphaCount = data.getAlphaCount();
@@ -250,6 +250,8 @@ public class Simulator {
String concentrationString = concentrationStringBuilder.toString();
List<String> comments = new ArrayList<>();
comments.add("Source Sample Plate filename: " + data.getSourceFilename());
comments.add("Source Graph and Data filename: " + dataFilename);
comments.add("T cell counts in sample plate wells: " + concentrationString);
comments.add("Total alphas found: " + alphaCount);
comments.add("Total betas found: " + betaCount);