Added timing to CDR3/CDR1 matching

2021-11-16 16:37:29 -06:00
parent 48510a5b60
commit 255a3ba66c
3 changed files with 22 additions and 12 deletions
--- a/src/main/java/UserInterface.java
+++ b/src/main/java/UserInterface.java
@@ -256,7 +256,7 @@ public class UserInterface {
            List<Integer[]> cells = cellReader.getCells();
            MatchingResult preliminaryResults = Simulator.matchCDR3s(cells, plate, lowThresholdCDR3, highThresholdCDR3);
            MatchingResult[] results = Simulator.matchCDR1s(cells, plate, lowThresholdCDR1,
-                    highThresholdCDR1, preliminaryResults.getMatchMap());
+                    highThresholdCDR1, preliminaryResults.getMatchMap(), preliminaryResults.getTime());

            //result writer
            MatchingFileWriter writer = new MatchingFileWriter(filename + "First", results[0].getComments(),