efischer/BiGpairSEQ
1
0
Fork 0
Code Issues Pull Requests Projects Releases 13 Wiki Activity

bugfix

Browse Source
This commit is contained in:
efischer
2021-11-16 09:29:07 -06:00
parent c28378632f
commit 26304e5dff
3 changed files with 98 additions and 17 deletions
Download Patch File Download Diff File Expand all files Collapse all files

9
src/main/java/UserInterface.java
View File

@@ -255,12 +255,15 @@ public class UserInterface {
}
List<Integer[]> cells = cellReader.getCells();
MatchingResult preliminaryResults = Simulator.matchCDR3s(cells, plate, lowThresholdCDR3, highThresholdCDR3);
MatchingResult results = Simulator.matchCDR1s(cells, plate, lowThresholdCDR1,
MatchingResult[] results = Simulator.matchCDR1s(cells, plate, lowThresholdCDR1,
highThresholdCDR1, preliminaryResults.getMatchMap());
//result writer
MatchingFileWriter writer = new MatchingFileWriter(filename, results.getComments(),
results.getHeaders(), results.getAllResults());
MatchingFileWriter writer = new MatchingFileWriter(filename + "First", results[0].getComments(),
results[0].getHeaders(), results[0].getAllResults());
writer.writeResultsToFile();
writer = new MatchingFileWriter(filename + "Dual", results[1].getComments(),
results[1].getHeaders(), results[1].getAllResults());
writer.writeResultsToFile();
}
}