diff --git a/src/main/java/Simulator.java b/src/main/java/Simulator.java index a151b8b..a4184ea 100644 --- a/src/main/java/Simulator.java +++ b/src/main/java/Simulator.java @@ -315,10 +315,6 @@ public class Simulator implements GraphModificationFunctions { metadata.put("real sequence collision rate", data.getRealSequenceCollisionRate().toString()); metadata.put("total alphas read from plate", data.getAlphaCount().toString()); metadata.put("total betas read from plate", data.getBetaCount().toString()); - //HARD CODED, PARAMETERIZE LATER - metadata.put("pre-filter sequences present in all wells", "true"); - //HARD CODED, PARAMETERIZE LATER - metadata.put("pre-filter sequences based on occupancy/read count discrepancy", "true"); metadata.put("alphas in graph (after pre-filtering)", graphAlphaCount.toString()); metadata.put("betas in graph (after pre-filtering)", graphBetaCount.toString()); metadata.put("high overlap threshold for pairing", highThreshold.toString());