From 289220e0d0e8e68eff89c44922302c26673d78d1 Mon Sep 17 00:00:00 2001
From: eugenefischer <66030419+eugenefischer@users.noreply.github.com>
Date: Thu, 29 Sep 2022 22:10:42 -0500
Subject: [PATCH] Remove statements about pre-filtering types. Can add that
 back if I ever actually parameterize that.

---
 src/main/java/Simulator.java | 4 ----
 1 file changed, 4 deletions(-)

diff --git a/src/main/java/Simulator.java b/src/main/java/Simulator.java
index a151b8b..a4184ea 100644
--- a/src/main/java/Simulator.java
+++ b/src/main/java/Simulator.java
@@ -315,10 +315,6 @@ public class Simulator implements GraphModificationFunctions {
         metadata.put("real sequence collision rate", data.getRealSequenceCollisionRate().toString());
         metadata.put("total alphas read from plate", data.getAlphaCount().toString());
         metadata.put("total betas read from plate", data.getBetaCount().toString());
-        //HARD CODED, PARAMETERIZE LATER
-        metadata.put("pre-filter sequences present in all wells", "true");
-        //HARD CODED, PARAMETERIZE LATER
-        metadata.put("pre-filter sequences based on occupancy/read count discrepancy", "true");
         metadata.put("alphas in graph (after pre-filtering)", graphAlphaCount.toString());
         metadata.put("betas in graph (after pre-filtering)", graphBetaCount.toString());
         metadata.put("high overlap threshold for pairing", highThreshold.toString());