Recording source file names in output files, allowing output of intermediate results

src/main/java/Plate.java

@@ -5,6 +5,7 @@ TODO: Implement discrete frequency distributions using Vose's Alias Method
  */
 
 public class Plate {
+    private String sourceFile;
     private List<List<Integer[]>> wells;
     private Random rand = new Random();
     private int size;
@@ -12,6 +13,7 @@ public class Plate {
     private Integer[] concentrations;
     private double stdDev;
 
+
     public Plate (int size, double error, Integer[] concentrations, double stdDev) {
         this.size = size;
         this.error = error;
@@ -20,12 +22,14 @@ public class Plate {
         wells = new ArrayList<>();
     }
 
-    public Plate(List<List<Integer[]>> wells){
+    public Plate(String sourceFileName, List<List<Integer[]>> wells){
+        this.sourceFile = sourceFileName;
         this.wells = wells;
         this.size = wells.size();
     }
 
-    public void fillWells(List<Integer[]> cells) {
+    public void fillWells(String sourceFileName, List<Integer[]> cells) {
+        sourceFile = sourceFileName;
         int numSections = concentrations.length;
         int section = 0;
         double m;
@@ -100,4 +104,8 @@ public class Plate {
             }
         }
     }
+
+    public String getSourceFileName() {
+        return sourceFile;
+    }
 }