Recording source file names in output files, allowing output of intermediate results

src/main/java/PlateFileWriter.java

@@ -15,6 +15,7 @@ public class PlateFileWriter {
     private double stdDev;
     private Double error;
     private String filename;
+    private String sourceFileName;
     private String[] headers;
     private List<Integer> concentrations;
 
@@ -23,6 +24,7 @@ public class PlateFileWriter {
             filename = filename + ".csv";
         }
         this.filename = filename;
+        this.sourceFileName = plate.getSourceFileName();
         this.size = plate.getSize();
         this.stdDev = plate.getStdDev();
         this.error = plate.getError();
@@ -32,10 +34,6 @@ public class PlateFileWriter {
     }
 
     public void writePlateFile(){
-        //works as is, but too many columns in csv, need to make them all rows.
-
-        //will now redo it so that every column is a well, with well names as headers
-        //need to give plate error, sample pop size, stdDev, num sections, concentration per section as comments
         Comparator<List<Integer[]>> listLengthDescending = Comparator.comparingInt(List::size);
         wells.sort(listLengthDescending.reversed());
         int maxLength = wells.get(0).size();
@@ -79,6 +77,7 @@ public class PlateFileWriter {
         try(BufferedWriter writer = Files.newBufferedWriter(Path.of(filename), StandardOpenOption.CREATE_NEW);
             CSVPrinter printer = new CSVPrinter(writer, plateFileFormat);
         ){
+            printer.printComment("Cell source file name: " + sourceFileName);
             printer.printComment("Each row represents one well on the plate.");
             printer.printComment("Plate size: " + size);
             printer.printComment("Error rate: " + error);