efischer/BiGpairSEQ
1
0
Fork 0
Code Issues Pull Requests Projects Releases 13 Wiki Activity

Recording source file names in output files, allowing output of intermediate results

Browse Source
This commit is contained in:
efischer
2021-11-18 15:38:29 -06:00
parent 09aa5961f3
commit 2ab93dd4b7
8 changed files with 73 additions and 29 deletions
Download Patch File Download Diff File Expand all files Collapse all files

8
src/main/java/Simulator.java
View File

@@ -213,7 +213,7 @@ public class Simulator {
System.out.println(s);
}
return new MatchingResult(comments, header, allResults, matchMap, time);
return new MatchingResult(samplePlate.getSourceFileName(), comments, header, allResults, matchMap, time);
}
//Simulated matching of CDR1s to CDR3s. Requires MatchingResult from prior run of matchCDR3s.
@@ -466,7 +466,8 @@ public class Simulator {
headers.add("second matched CDR1");
headers.add("Correct match?");
MatchingResult firstTest = new MatchingResult(comments, headers, allResults, dualMatchesMap, time);
MatchingResult firstTest = new MatchingResult(samplePlate.getSourceFileName(),
comments, headers, allResults, dualMatchesMap, time);
//results for dual map
System.out.println("RESULTS FOR SECOND PASS MATCHING");
@@ -515,7 +516,8 @@ public class Simulator {
}
System.out.println("Simulation time: " + nf.format(time.toSeconds()) + " seconds");
MatchingResult dualTest = new MatchingResult(comments, headers, allResults, dualMatchesMap, time);
MatchingResult dualTest = new MatchingResult(samplePlate.getSourceFileName(), comments, headers,
allResults, dualMatchesMap, time);
MatchingResult[] output = {firstTest, dualTest};
return output;
}