Command line arguments for CDR3 matching implemented

2021-11-20 10:43:57 -06:00
parent 981e24011d
commit 32593308df
3 changed files with 4 additions and 3 deletions
--- a/src/main/java/UserInterface.java
+++ b/src/main/java/UserInterface.java
@@ -237,7 +237,7 @@ public class UserInterface {
            List<Integer[]> cells = cellReader.getCells();
            MatchingResult results = Simulator.matchCDR3s(cells, plate, lowThreshold, highThreshold, false);
            //result writer
-            MatchingFileWriter writer = new MatchingFileWriter(null, results);
+            MatchingFileWriter writer = new MatchingFileWriter("", results);
            writer.writeErrorRateToTerminal();
        }
    }