Refactor to reduce code repetition

2021-11-18 14:11:04 -06:00
parent 2064d7e9fc
commit 34e96d3b3d
3 changed files with 179 additions and 590 deletions
--- a/src/main/java/UserInterface.java
+++ b/src/main/java/UserInterface.java
@@ -260,7 +260,7 @@ public class UserInterface {
            List<Integer[]> cells = cellReader.getCells();
            MatchingResult preliminaryResults = Simulator.matchCDR3s(cells, plate, lowThresholdCDR3, highThresholdCDR3);
            MatchingResult[] results = Simulator.matchCDR1s(cells, plate, lowThresholdCDR1,
-                    highThresholdCDR1, preliminaryResults.getMatchMap(), preliminaryResults.getTime());
+                    highThresholdCDR1, preliminaryResults);

            //result writer
            MatchingFileWriter writer = new MatchingFileWriter(filename + "First", results[0].getComments(),