diff --git a/src/main/java/BiGpairSEQ.java b/src/main/java/BiGpairSEQ.java index 360e1f5..9beaea2 100644 --- a/src/main/java/BiGpairSEQ.java +++ b/src/main/java/BiGpairSEQ.java @@ -16,6 +16,7 @@ public class BiGpairSEQ { private static HeapType priorityQueueHeapType = HeapType.FIBONACCI; private static boolean outputBinary = true; private static boolean outputGraphML = false; + private static boolean simulateReadDepth = false; private static final String version = "version 3.0"; public static void main(String[] args) { @@ -174,4 +175,12 @@ public class BiGpairSEQ { public static boolean outputGraphML() {return outputGraphML;} public static void setOutputGraphML(boolean b) {outputGraphML = b;} public static String getVersion() { return version; } + + public static boolean getSimulateReadDepth() { + return simulateReadDepth; + } + + public static void setSimulateReadDepth(boolean simulateReadDepth) { + BiGpairSEQ.simulateReadDepth = simulateReadDepth; + } }