From 56454417c04947c761956083373d3b9c66ceaee5 Mon Sep 17 00:00:00 2001
From: eugenefischer <66030419+eugenefischer@users.noreply.github.com>
Date: Sun, 25 Sep 2022 14:34:31 -0500
Subject: [PATCH] Revert "Restore pre-filtering of singleton and saturating
 sequences"

This reverts commit 5c03909a11ecf4e476943491f5647e3b9b33d19b.
---
 src/main/java/Simulator.java | 8 ++++----
 1 file changed, 4 insertions(+), 4 deletions(-)

diff --git a/src/main/java/Simulator.java b/src/main/java/Simulator.java
index 6ba2cbf..c94db0c 100644
--- a/src/main/java/Simulator.java
+++ b/src/main/java/Simulator.java
@@ -48,10 +48,10 @@ public class Simulator implements GraphModificationFunctions {
         if(verbose){System.out.println("Well maps made");}
 
 
-        if(verbose){System.out.println("Removing singleton sequences and sequences present in all wells.");}
-        filterByOccupancyThresholds(allAlphas, 2, numWells - 1);
-        filterByOccupancyThresholds(allBetas, 2, numWells - 1);
-        if(verbose){System.out.println("Sequences removed");}
+//        if(verbose){System.out.println("Removing singleton sequences and sequences present in all wells.");}
+//        filterByOccupancyThresholds(allAlphas, 2, numWells - 1);
+//        filterByOccupancyThresholds(allBetas, 2, numWells - 1);
+//        if(verbose){System.out.println("Sequences removed");}
         int pairableAlphaCount = allAlphas.size();
         if(verbose){System.out.println("Remaining alphas count: " + pairableAlphaCount);}
         int pairableBetaCount = allBetas.size();