Refactoring to allow graphs from file

src/main/java/GraphWithMapData.java

@@ -0,0 +1,65 @@
+import org.jgrapht.graph.SimpleWeightedGraph;
+
+import java.time.Duration;
+import java.util.Map;
+
+public class GraphWithMapData {
+    private final SimpleWeightedGraph graph;
+    private final MapData maps;
+    private final Map<Integer, Integer> alphaWellCounts;
+    private final Map<Integer, Integer> betaWellCounts;
+    private final Duration time;
+
+    public GraphWithMapData(SimpleWeightedGraph graph, MapData maps, Map<Integer, Integer> alphaWellCounts,
+                            Map<Integer, Integer> betaWellCounts, Duration time) {
+        this.graph = graph;
+        this.maps = maps;
+        this.alphaWellCounts = alphaWellCounts;
+        this.betaWellCounts = betaWellCounts;
+        this.time = time.plus(maps.getTime());
+    }
+
+    public SimpleWeightedGraph getGraph() {
+        return graph;
+    }
+
+    public Map<Integer, Integer> getDistCellsMapAlphaKey() {
+        return maps.getDistCellsMapAlphaKey();
+    }
+
+    public Map<Integer, Integer> getAllAlphas() {
+        return maps.getAllAlphas();
+    }
+
+    public Map<Integer, Integer> getAllBetas() {
+        return maps.getAllBetas();
+    }
+
+    public Map<Integer, Integer> getPlateVtoAMap() {
+        return maps.getPlateVtoAMap();
+    }
+
+    public Map<Integer, Integer> getPlateVtoBMap() {
+        return maps.getPlateVtoBMap();
+    }
+
+    public Map<Integer, Integer> getPlateAtoVMap() {
+        return maps.getPlateAtoVMap();
+    }
+
+    public Map<Integer, Integer> getPlateBtoVMap() {
+        return maps.getPlateBtoVMap();
+    }
+
+    public Map<Integer, Integer> getAlphaWellCounts() {
+        return alphaWellCounts;
+    }
+
+    public Map<Integer, Integer> getBetaWellCounts() {
+        return betaWellCounts;
+    }
+
+    public Duration getTime() {
+        return time;
+    }
+}