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update TODO

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eugenefischer
2022-09-27 15:08:16 -05:00
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commit 5bd1e568a6
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@@ -357,7 +357,8 @@ roughly as though it had a constant well population equal to the plate's average
* Re-implement CDR1 matching method * Re-implement CDR1 matching method
* ~~Implement simulation of read depth, and of read errors. Pre-filter graph for difference in read count to eliminate spurious sequences.~~ DONE * ~~Implement simulation of read depth, and of read errors. Pre-filter graph for difference in read count to eliminate spurious sequences.~~ DONE
* Pre-filtering based on comparing (read depth) * (occupancy) to (read count) for each sequence works extremely well * Pre-filtering based on comparing (read depth) * (occupancy) to (read count) for each sequence works extremely well
* Add read depth simulation options to CLI * ~~Add read depth simulation options to CLI~~ DONE
* Update matching metadata output options in CLI
* Update performance data in this readme * Update performance data in this readme
* Refactor simulator code to collect all needed data in a single scan of the plate * Refactor simulator code to collect all needed data in a single scan of the plate
* Currently it scans once for the vertices and then again for the edge weights. This made simulating read depth awkward, and incompatible with caching of plate files. * Currently it scans once for the vertices and then again for the edge weights. This made simulating read depth awkward, and incompatible with caching of plate files.