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Add plate well concentrations to output data

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efischer
2022-02-20 01:53:34 -06:00
parent c96b7237e9
commit 5d0e60708c
4 changed files with 14 additions and 10 deletions
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6
src/main/java/UserInterface.java
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@@ -375,7 +375,7 @@ public class UserInterface {
System.out.println(" * selected from a statistical distribution of distinct cells");
System.out.println(" * with a set dropout rate for individual sequences within a cell");
System.out.println("\nMaking a sample plate requires a population of distinct cells");
System.out.println("Please enter name of an existing cell sample file: ");
System.out.print("Please enter name of an existing cell sample file: ");
cellFile = sc.next();
System.out.println("\nThe sample plate will be written to a CSV file");
System.out.print("Please enter a name for the output file: ");
@@ -530,11 +530,11 @@ public class UserInterface {
System.out.print("Please enter a name for the output file: ");
filename = sc.next();
System.out.println("Bipartite graph can be pre-filtered for relative alpha/beta occupancy.");
System.out.println("(To skip pre-filtering: enter number of wells on the sample plate used to make graph)");
System.out.println("(To skip pre-filtering: enter number of wells on the plate used to make graph)");
System.out.println("What is the maximum difference in alpha/beta occupancy to attempt matching?");
maxOccupancyDiff = sc.nextInt();
System.out.println("Bipartite graph can be pre-filtered for pair well overlap percentage");
System.out.println("(To skip pre-filtering: enter 0");
System.out.println("(To skip pre-filtering: enter 0)");
System.out.println("What is the minimum overlap percentage to attempt matching? (0 - 100)");
minOverlapPercent = sc.nextInt();
if (minOverlapPercent < 0 || minOverlapPercent > 100) {