efischer/BiGpairSEQ
1
0
Fork 0
Code Issues Pull Requests Projects Releases 13 Wiki Activity

notes toward command line read depth option

Browse Source
This commit is contained in:
eugenefischer
2022-09-26 14:25:30 -05:00
parent 8a8c89c9ba
commit 60cf6775c2
1 changed files with 4 additions and 0 deletions
Download Patch File Download Diff File Expand all files Collapse all files

4
src/main/java/CommandLineInterface.java
View File

@@ -35,6 +35,10 @@ import java.util.stream.Stream;
* output : name of the output file * output : name of the output file
* graphml : output a graphml file * graphml : output a graphml file
* binary : output a serialized binary object file * binary : output a serialized binary object file
* IF SIMULATING READ DEPTH, ALL THESE ARE REQUIRED. Absence indicates not simulating read depth
* readdepth: number of reads per sequence
* readerrorprob: probability of reading a sequence incorrectly
* errcollisionprob: probability of two read errors being identical
* *
* Match flags: * Match flags:
* graphFile : name of graph and data file to use as input * graphFile : name of graph and data file to use as input