efischer/BiGpairSEQ
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efischer
2022-02-20 03:08:31 -06:00
parent d1c37b5ccd
commit 74c8cafd81
2 changed files with 1 additions and 2 deletions
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out/artifacts/TCellSim_jar/TCellSim.jar
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src/main/java/UserInterface.java
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@@ -479,7 +479,7 @@ public class UserInterface {
plateFile = sc.next(); plateFile = sc.next();
System.out.println("\nThe graph and occupancy data will be written to a serialized binary file."); System.out.println("\nThe graph and occupancy data will be written to a serialized binary file.");
System.out.print("Please enter a name for the output file: "); System.out.print("Please enter a name for the output file: ");
filename = sc.next();
} catch (InputMismatchException ex) { } catch (InputMismatchException ex) {
System.out.println(ex); System.out.println(ex);
sc.next(); sc.next();
@@ -521,7 +521,6 @@ public class UserInterface {
System.out.println("The matching results will be written to a file."); System.out.println("The matching results will be written to a file.");
System.out.print("Please enter a name for the output file: "); System.out.print("Please enter a name for the output file: ");
filename = sc.next(); filename = sc.next();
filename = sc.next();
System.out.println("\nWhat is the minimum number of CDR3 alpha/beta overlap wells to attempt matching?"); System.out.println("\nWhat is the minimum number of CDR3 alpha/beta overlap wells to attempt matching?");
lowThreshold = sc.nextInt(); lowThreshold = sc.nextInt();
if(lowThreshold < 1){ if(lowThreshold < 1){