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Refactor to simplify graph creation code

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eugenefischer
2022-09-28 00:07:59 -05:00
parent 35a519d499
commit 88b6c79caa
5 changed files with 330 additions and 256 deletions
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2
src/main/java/InteractiveInterface.java
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@@ -338,7 +338,7 @@ public class InteractiveInterface {
System.out.println("Returning to main menu.");
}
else{
GraphWithMapData data = Simulator.makeGraph(cellSample, plate, readDepth, readErrorRate, errorCollisionRate, true);
GraphWithMapData data = Simulator.makeCDR3Graph(cellSample, plate, readDepth, readErrorRate, errorCollisionRate, true);
assert filename != null;
if(BiGpairSEQ.outputBinary()) {
GraphDataObjectWriter dataWriter = new GraphDataObjectWriter(filename, data);