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Update output example

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eugenefischer
2022-10-01 14:30:46 -05:00
parent 99c92e6eb5
commit 89295777ef
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@@ -418,7 +418,10 @@ Options when running a BiGpairSEQ simulation of CDR3 alpha/beta matching:
Example output: Example output:
``` ```
# cell sample filename: 8MilCells.csv
# cell sample size: 8000000
# sample plate filename: 8MilCells_Plate.csv # sample plate filename: 8MilCells_Plate.csv
# sample plate well count: 96
# sequence dropout rate: 0.1 # sequence dropout rate: 0.1
# graph filename: 8MilGraph_rd2 # graph filename: 8MilGraph_rd2
# MWM algorithm type: LEDA book with heap: FIBONACCI # MWM algorithm type: LEDA book with heap: FIBONACCI
@@ -430,8 +433,6 @@ Example output:
# real sequence collision rate: 0.05 # real sequence collision rate: 0.05
# total alphas read from plate: 323711 # total alphas read from plate: 323711
# total betas read from plate: 323981 # total betas read from plate: 323981
# pre-filter sequences present in all wells: true
# pre-filter sequences based on occupancy/read count discrepancy: true
# alphas in graph (after pre-filtering): 11707 # alphas in graph (after pre-filtering): 11707
# betas in graph (after pre-filtering): 11705 # betas in graph (after pre-filtering): 11705
# high overlap threshold for pairing: 95 # high overlap threshold for pairing: 95