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Remove singleton sequences from wells in initial filtering

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efischer
2022-03-04 16:14:17 -06:00
parent b602fb02f1
commit 96ba57d653
1 changed files with 3 additions and 3 deletions
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6
src/main/java/Simulator.java
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@@ -46,9 +46,9 @@ public class Simulator implements GraphModificationFunctions {
if(verbose){System.out.println("All betas count: " + betaCount);}
if(verbose){System.out.println("Well maps made");}
if(verbose){System.out.println("Removing sequences present in all wells.");}
filterByOccupancyThresholds(allAlphas, 1, numWells - 1);
filterByOccupancyThresholds(allBetas, 1, numWells - 1);
if(verbose){System.out.println("Removing singleton sequences and sequences present in all wells.");}
filterByOccupancyThresholds(allAlphas, 2, numWells - 1);
filterByOccupancyThresholds(allBetas, 2, numWells - 1);
if(verbose){System.out.println("Sequences removed");}
int pairableAlphaCount = allAlphas.size();
if(verbose){System.out.println("Remaining alphas count: " + pairableAlphaCount);}