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Fix bug in correct match counter

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eugenefischer
2022-09-21 15:59:23 -05:00
parent 817fe51708
commit 9ae38bf247
1 changed files with 2 additions and 2 deletions
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4
src/main/java/Simulator.java
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@@ -106,7 +106,7 @@ public class Simulator implements GraphModificationFunctions {
//List<Integer> alphaVertices = new ArrayList<>(plateVtoAMap.keySet()); //This will work because LinkedHashMap preserves order of entry //List<Integer> alphaVertices = new ArrayList<>(plateVtoAMap.keySet()); //This will work because LinkedHashMap preserves order of entry
List<Vertex> alphaVertices = new ArrayList<>(); List<Vertex> alphaVertices = new ArrayList<>();
//start with map of all alphas mapped to vertex values, get occupancy from the alphaWellCounts map //start with map of all alphas mapped to vertex values, get occupancy from the alphaWellCounts map
for (Integer seq: plateAtoVMap.keySet()) { for (Integer seq : plateAtoVMap.keySet()) {
Vertex alphaVertex = new Vertex(SequenceType.CDR3_ALPHA, seq, alphaWellCounts.get(seq), plateAtoVMap.get(seq)); Vertex alphaVertex = new Vertex(SequenceType.CDR3_ALPHA, seq, alphaWellCounts.get(seq), plateAtoVMap.get(seq));
alphaVertices.add(alphaVertex); alphaVertices.add(alphaVertex);
} }
@@ -236,7 +236,7 @@ public class Simulator implements GraphModificationFunctions {
//Integer target = graph.getEdgeTarget(e); //Integer target = graph.getEdgeTarget(e);
//The match map is all matches found, not just true matches! //The match map is all matches found, not just true matches!
matchMap.put(source.getSequence(), target.getSequence()); matchMap.put(source.getSequence(), target.getSequence());
check = target.getOccupancy().equals(distCellsMapAlphaKey.get(source.getSequence())); check = target.getSequence().equals(distCellsMapAlphaKey.get(source.getSequence()));
//check = plateVtoBMap.get(target).equals(distCellsMapAlphaKey.get(plateVtoAMap.get(source))); //check = plateVtoBMap.get(target).equals(distCellsMapAlphaKey.get(plateVtoAMap.get(source)));
if(check) { if(check) {
trueCount++; trueCount++;