add disclosure section
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readme.md
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readme.md
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7. CITATIONS
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7. CITATIONS
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8. ACKNOWLEDGEMENTS
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8. ACKNOWLEDGEMENTS
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9. AUTHOR
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9. AUTHOR
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10. DISCLOSURE
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## ABOUT
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## ABOUT
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* [Apache Commons CLI](https://commons.apache.org/proper/commons-cli/) -- To enable command line arguments for scripting.
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* [Apache Commons CLI](https://commons.apache.org/proper/commons-cli/) -- To enable command line arguments for scripting.
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## ACKNOWLEDGEMENTS
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## ACKNOWLEDGEMENTS
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BiGpairSEQ was conceived in collaboration with Dr. Alice MacQueen, who brought the original
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BiGpairSEQ was conceived in collaboration with the author's spouse, Dr. Alice MacQueen, who brought the original
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pairSEQ paper to the author's attention and explained all the biology terms he didn't know.
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pairSEQ paper to the author's attention and explained all the biology terms he didn't know.
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## AUTHOR
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## AUTHOR
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BiGpairSEQ algorithm and simulation by Eugene Fischer, 2021. Improvements and documentation, 2022.
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BiGpairSEQ algorithm and simulation by Eugene Fischer, 2021. Improvements and documentation, 2022–2023.
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## DISCLOSURE
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The earliest versions of the BiGpairSEQ simulator were written in 2021 to let Dr. MacQueen test hypothetical extensions
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of the published pairSEQ protocol while she was interviewing for a position at Adaptive Biotechnologies. She has been
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employed at Adaptive Biotechnologies since 2022.
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The author has worked on this BiGpairSEQ simulator since 2021 without Dr. MacQueen's involvement, since she has had
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access to related, proprietary technologies. The author has had no such access, relying exclusively on the 2015 pairSEQ
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paper and other academic publications. He continues to work on BiGpairSEQ
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recreationally, as it involves some very beautiful math.
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