diff --git a/readme.md b/readme.md index 4908318..b6f2251 100644 --- a/readme.md +++ b/readme.md @@ -347,9 +347,9 @@ roughly as though it had a constant well population equal to the plate's average * ~~Apache Commons CSV library writes entries a row at a time~~ * _Got this working, but at the cost of a profoundly strange bug in graph occupancy filtering. Have reverted the repo until I can figure out what caused that. Given how easily Thingiverse transposes CSV matrices in R, might not even be worth fixing. * ~~Enable GraphML output in addition to serialized object binaries, for data portability~~ DONE - * ~~Custom vertex type with attribute for sequence occupancy?~~ ABANDONED + * ~~Custom vertex type with attribute for sequence occupancy?~~ DONE * Advantage: would eliminate the need to use maps to associate vertices with sequences, which would make the code easier to understand. - * Have a branch where this is implemented, but there's a bug that broke matching. Don't currently have time to fix. + * ~~Have a branch where this is implemented, but there's a bug that broke matching. Don't currently have time to fix.~~ * ~~Re-implement command line arguments, to enable scripting and statistical simulation studies~~ DONE * Re-implement CDR1 matching method * Implement Duan and Su's maximum weight matching algorithm