Refactor for better encapsulation with CellSamples
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@@ -304,8 +304,7 @@ public class InteractiveInterface {
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System.out.println("Returning to main menu.");
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}
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else{
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List<Integer[]> cells = cellSample.getCells();
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GraphWithMapData data = Simulator.makeGraph(cells, plate, true);
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GraphWithMapData data = Simulator.makeGraph(cellSample, plate, true);
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assert filename != null;
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if(BiGpairSEQ.outputBinary()) {
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GraphDataObjectWriter dataWriter = new GraphDataObjectWriter(filename, data);
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