Refactor for better encapsulation with CellSamples

2022-02-27 14:51:53 -06:00
parent 8ebfc1469f
commit a5f7c0641d
2 changed files with 3 additions and 3 deletions
--- a/src/main/java/Simulator.java
+++ b/src/main/java/Simulator.java
@@ -24,8 +24,9 @@ public class Simulator implements GraphModificationFunctions {
    private static final int cdr1BetaIndex = 3;

    //Make the graph needed for matching CDR3s
-    public static GraphWithMapData makeGraph(List<Integer[]> distinctCells, Plate samplePlate, boolean verbose) {
+    public static GraphWithMapData makeGraph(CellSample cellSample, Plate samplePlate, boolean verbose) {
        Instant start = Instant.now();
+        List<Integer[]> distinctCells = cellSample.getCells();
        int[] alphaIndex = {cdr3AlphaIndex};
        int[] betaIndex = {cdr3BetaIndex};