efischer/BiGpairSEQ
1
0
Fork 0
Code Issues Pull Requests Projects Releases 13 Wiki Activity

Command line arguments working, need better documentation and error handling

Browse Source
This commit is contained in:
efischer
2021-11-23 12:24:48 -06:00
parent 32593308df
commit acff88475b
6 changed files with 358 additions and 38 deletions
Download Patch File Download Diff File Expand all files Collapse all files

17
src/main/java/PlateFileWriter.java
View File

@@ -13,11 +13,13 @@ public class PlateFileWriter {
private int size;
private List<List<Integer[]>> wells;
private double stdDev;
private double lambda;
private Double error;
private String filename;
private String sourceFileName;
private String[] headers;
private List<Integer> concentrations;
private boolean isExponential = false;
public PlateFileWriter(String filename, Plate plate) {
if(!filename.matches(".*\\.csv")){
@@ -26,7 +28,13 @@ public class PlateFileWriter {
this.filename = filename;
this.sourceFileName = plate.getSourceFileName();
this.size = plate.getSize();
this.stdDev = plate.getStdDev();
this.isExponential = plate.isExponential();
if(isExponential) {
this.lambda = plate.getLambda();
}
else{
this.stdDev = plate.getStdDev();
}
this.error = plate.getError();
this.wells = plate.getWells();
this.concentrations = Arrays.asList(plate.getConcentrations());
@@ -82,7 +90,12 @@ public class PlateFileWriter {
printer.printComment("Plate size: " + size);
printer.printComment("Error rate: " + error);
printer.printComment("Concentrations: " + concenString);
printer.printComment("Std. dev.: " + stdDev);
if(isExponential){
printer.printComment("Lambda: " + lambda);
}
else {
printer.printComment("Std. dev.: " + stdDev);
}
printer.printRecords(wellsAsStrings);
} catch(IOException ex){
System.out.println("Could not make new file named "+filename);