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efischer
2022-02-26 11:03:31 -06:00
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@@ -288,7 +288,7 @@ slightly less time than the simulation itself. Real elapsed time from start to f
* ~~Apache Commons CSV library writes entries a row at a time~~ * ~~Apache Commons CSV library writes entries a row at a time~~
* _Got this working, but at the cost of a profoundly strange bug in graph occupancy filtering. Have reverted the repo until I can figure out what caused that. Given how easily Thingiverse transposes CSV matrices in R, might not even be worth fixing. * _Got this working, but at the cost of a profoundly strange bug in graph occupancy filtering. Have reverted the repo until I can figure out what caused that. Given how easily Thingiverse transposes CSV matrices in R, might not even be worth fixing.
* ~~Enable GraphML output in addition to serialized object binaries, for data portability~~ DONE * ~~Enable GraphML output in addition to serialized object binaries, for data portability~~ DONE
* ~~Custom vertex type with attribute for sequence occupancy?~~ABANDONED * ~~Custom vertex type with attribute for sequence occupancy?~~ ABANDONED
* Have a branch where this is implemented, but there's a bug that broke matching. Don't currently have time to fix. * Have a branch where this is implemented, but there's a bug that broke matching. Don't currently have time to fix.
* Re-implement command line arguments, to enable scripting and statistical simulation studies * Re-implement command line arguments, to enable scripting and statistical simulation studies
* Re-implement CDR1 matching method * Re-implement CDR1 matching method