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Revert "update TODO"

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This reverts commit a054c0c20a.
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eugenefischer
2022-09-25 14:34:31 -05:00
parent 61d1eb3eb1
commit bd6d010b0b
1 changed files with 2 additions and 2 deletions
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@@ -347,9 +347,9 @@ roughly as though it had a constant well population equal to the plate's average
* ~~Apache Commons CSV library writes entries a row at a time~~
* _Got this working, but at the cost of a profoundly strange bug in graph occupancy filtering. Have reverted the repo until I can figure out what caused that. Given how easily Thingiverse transposes CSV matrices in R, might not even be worth fixing.
* ~~Enable GraphML output in addition to serialized object binaries, for data portability~~ DONE
* ~~Custom vertex type with attribute for sequence occupancy?~~ DONE
* ~~Custom vertex type with attribute for sequence occupancy?~~ ABANDONED
* Advantage: would eliminate the need to use maps to associate vertices with sequences, which would make the code easier to understand.
* ~~Have a branch where this is implemented, but there's a bug that broke matching. Don't currently have time to fix.~~
* Have a branch where this is implemented, but there's a bug that broke matching. Don't currently have time to fix.
* ~~Re-implement command line arguments, to enable scripting and statistical simulation studies~~ DONE
* Re-implement CDR1 matching method
* Implement Duan and Su's maximum weight matching algorithm