diff --git a/readme.md b/readme.md index 98e8349..26bc757 100644 --- a/readme.md +++ b/readme.md @@ -459,7 +459,7 @@ Example output: --- **NOTE: The p-values in the sample output above are not used for matching**—they aren't part of the BiGpairSEQ algorithm at all. -P-values (if enabled in the interactive menu options or by using the -pv flag in the command line) are calculated *after* +P-values (if enabled in the interactive menu options or by using the -pv flag on the command line) are calculated *after* BiGpairSEQ matching is completed, for purposes of comparison with pairSEQ only, using the (corrected) formula from the original pairSEQ paper. (Howie, et al. 2015) Calculation of p-values is off by default to reduce processing time.