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implement option menu for file caching

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efischer
2022-02-23 20:35:31 -06:00
parent 4bcda9b66c
commit c068c3db3c
2 changed files with 61 additions and 0 deletions
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35
src/main/java/InteractiveInterface.java
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@@ -27,6 +27,7 @@ public class InteractiveInterface {
//Need to re-do the CDR3/CDR1 matching to correspond to new pattern
//System.out.println("5) Generate CDR3/CDR1 occupancy graph");
//System.out.println("6) Simulate CDR3/CDR1 T cell matching");
System.out.println("8) Options");
System.out.println("9) About/Acknowledgments");
System.out.println("0) Exit");
try {
@@ -37,6 +38,7 @@ public class InteractiveInterface {
case 3 -> makeCDR3Graph();
case 4 -> matchCDR3s();
//case 6 -> matchCellsCDR1();
case 8 -> options();
case 9 -> acknowledge();
case 0 -> quit = true;
default -> throw new InputMismatchException("Invalid input.");
@@ -493,6 +495,39 @@ public class InteractiveInterface {
// }
// }
private static void options(){
boolean backToMain = false;
while(!backToMain) {
System.out.println("-------------OPTIONS----------------");
System.out.println("1) Turn cell sample file caching " + getOnOff(!BiGpairSEQ.cacheCells()));
System.out.println("2) Turn sample plate file caching " + getOnOff(!BiGpairSEQ.cachePlate()));
System.out.println("3) Turn graph/data file caching " + getOnOff(!BiGpairSEQ.cacheGraph()));
System.out.println("0) Return to main menu");
try {
input = sc.nextInt();
switch (input) {
case 1 -> BiGpairSEQ.setCacheCells(!BiGpairSEQ.cacheCells());
case 2 -> BiGpairSEQ.setCachePlate(!BiGpairSEQ.cachePlate());
case 3 -> BiGpairSEQ.setCacheGraph(!BiGpairSEQ.cacheGraph());
case 0 -> backToMain = true;
default -> throw new InputMismatchException("Invalid input.");
}
} catch (InputMismatchException ex) {
System.out.println(ex);
sc.next();
}
}
}
private static String getOnOff(boolean b) {
if (b) {
return "on";
}
else {
return "off";
}
}
private static void acknowledge(){
System.out.println("This program simulates BiGpairSEQ, a graph theory based adaptation");
System.out.println("of the pairSEQ algorithm for pairing T cell receptor sequences.");