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Update readme with read depth TODO

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eugenefischer
2022-09-25 21:50:59 -05:00
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@@ -354,6 +354,7 @@ roughly as though it had a constant well population equal to the plate's average
* ~~Implement custom Vertex class to simplify code and make it easier to implement different MWM algorithms~~ DONE * ~~Implement custom Vertex class to simplify code and make it easier to implement different MWM algorithms~~ DONE
* This also seems to be faster when using the same algorithm than the version with lots of maps, which is a nice bonus! * This also seems to be faster when using the same algorithm than the version with lots of maps, which is a nice bonus!
* Re-implement CDR1 matching method * Re-implement CDR1 matching method
* Implement simulation of read depth, and of read errors. Pre-filter graph for difference in read count to eliminate spurious sequences.
* Implement Duan and Su's maximum weight matching algorithm * Implement Duan and Su's maximum weight matching algorithm
* Add controllable algorithm-type parameter? * Add controllable algorithm-type parameter?
* This would be fun and valuable, but probably take more time than I have for a hobby project. * This would be fun and valuable, but probably take more time than I have for a hobby project.