efischer/BiGpairSEQ
1
0
Fork 0
Code Issues Pull Requests Projects Releases 13 Wiki Activity

Correct propogation of peptide counts

Browse Source
This commit is contained in:
efischer
2022-02-19 22:33:38 -06:00
parent 5b2ed165d0
commit c4633da9eb
4 changed files with 22 additions and 22 deletions
Download Patch File Download Diff File Expand all files Collapse all files

30
src/main/java/GraphWithMapData.java
View File

@@ -11,11 +11,11 @@ public class GraphWithMapData implements java.io.Serializable {
private String sourceFilename;
private final SimpleWeightedGraph graph;
private Integer numWells;
private Integer alphaCount;
private Integer betaCount;
private Integer lowThreshold;
private Integer highThreshold;
private final Map<Integer, Integer> distCellsMapAlphaKey;
private final Map<Integer, Integer> allAlphas;
private final Map<Integer, Integer> allBetas;
private final Map<Integer, Integer> plateVtoAMap;
private final Map<Integer, Integer> plateVtoBMap;
private final Map<Integer, Integer> plateAtoVMap;
@@ -24,19 +24,19 @@ public class GraphWithMapData implements java.io.Serializable {
private final Map<Integer, Integer> betaWellCounts;
private final Duration time;
public GraphWithMapData(SimpleWeightedGraph graph, Integer numWells, Integer lowThreshold, Integer highThreshold,
Map<Integer, Integer> distCellsMapAlphaKey, Map<Integer, Integer> allAlphas,
Map<Integer, Integer> allBetas, Map<Integer, Integer> plateVtoAMap,
public GraphWithMapData(SimpleWeightedGraph graph, Integer numWells, Integer alphaCount, Integer betaCount,
Integer lowThreshold, Integer highThreshold,
Map<Integer, Integer> distCellsMapAlphaKey, Map<Integer, Integer> plateVtoAMap,
Map<Integer,Integer> plateVtoBMap, Map<Integer, Integer> plateAtoVMap,
Map<Integer, Integer> plateBtoVMap, Map<Integer, Integer> alphaWellCounts,
Map<Integer, Integer> betaWellCounts, Duration time) {
this.graph = graph;
this.numWells = numWells;
this.alphaCount = alphaCount;
this.betaCount = betaCount;
this.lowThreshold = lowThreshold;
this.highThreshold = highThreshold;
this.distCellsMapAlphaKey = distCellsMapAlphaKey;
this.allAlphas = allAlphas;
this.allBetas = allBetas;
this.plateVtoAMap = plateVtoAMap;
this.plateVtoBMap = plateVtoBMap;
this.plateAtoVMap = plateAtoVMap;
@@ -54,6 +54,14 @@ public class GraphWithMapData implements java.io.Serializable {
return numWells;
}
public Integer getAlphaCount() {
return alphaCount;
}
public Integer getBetaCount() {
return betaCount;
}
public Integer getLowThreshold() {
return lowThreshold;
}
@@ -66,14 +74,6 @@ public class GraphWithMapData implements java.io.Serializable {
return distCellsMapAlphaKey;
}
public Map<Integer, Integer> getAllAlphas() {
return allAlphas;
}
public Map<Integer, Integer> getAllBetas() {
return allBetas;
}
public Map<Integer, Integer> getPlateVtoAMap() {
return plateVtoAMap;
}