From c7934ca498a77fc27043a86d97195fcdf9ac5089 Mon Sep 17 00:00:00 2001
From: eugenefischer <66030419+eugenefischer@users.noreply.github.com>
Date: Mon, 3 Oct 2022 21:30:32 -0500
Subject: [PATCH] update TODO

---
 readme.md | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/readme.md b/readme.md
index 9bacc2e..7c47326 100644
--- a/readme.md
+++ b/readme.md
@@ -620,9 +620,9 @@ the file of distinct cells may enable better simulated replication of this exper
 * Update performance data in this readme
 * Add section to ReadMe describing data filtering methods.
 * Re-implement CDR1 matching method
-* Refactor simulator code to collect all needed data in a single scan of the plate
-  * Currently it scans once for the vertices and then again for the edge weights. This made simulating read depth awkward, and incompatible with caching of plate files.
-  * This would be a fairly major rewrite of the simulator code, but could make things faster, and would definitely make them cleaner.
+* ~~Refactor simulator code to collect all needed data in a single scan of the plate~~ DONE
+  * ~~Currently it scans once for the vertices and then again for the edge weights. This made simulating read depth awkward, and incompatible with caching of plate files.~~
+  * ~~This would be a fairly major rewrite of the simulator code, but could make things faster, and would definitely make them cleaner.~~
 * Implement Duan and Su's maximum weight matching algorithm
     * Add controllable algorithm-type parameter?
     * This would be fun and valuable, but probably take more time than I have for a hobby project.