efischer/BiGpairSEQ
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Hand-merge of some things from Dev_Vertex branch that didn't make it in for some reason

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eugenefischer
2022-09-25 19:07:25 -05:00
parent 16daf02dd6
commit d1a56c3578
5 changed files with 57 additions and 40 deletions
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4
src/main/java/InteractiveInterface.java
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@@ -258,7 +258,7 @@ public class InteractiveInterface {
cellFile = sc.next();
System.out.print("\nPlease enter name of an existing sample plate file: ");
plateFile = sc.next();
System.out.println("\nThe graph and occupancy data will be written to a serialized binary file.");
System.out.println("\nThe graph and occupancy data will be written to a file.");
System.out.print("Please enter a name for the output file: ");
filename = sc.next();
} catch (InputMismatchException ex) {
@@ -504,7 +504,7 @@ public class InteractiveInterface {
System.out.println("2) Turn " + getOnOff(!BiGpairSEQ.cachePlate()) + " plate file caching");
System.out.println("3) Turn " + getOnOff(!BiGpairSEQ.cacheGraph()) + " graph/data file caching");
System.out.println("4) Turn " + getOnOff(!BiGpairSEQ.outputBinary()) + " serialized binary graph output");
System.out.println("5) Turn " + getOnOff(!BiGpairSEQ.outputGraphML()) + " GraphML graph output");
System.out.println("5) Turn " + getOnOff(!BiGpairSEQ.outputGraphML()) + " GraphML graph output (for data portability to other programs)");
System.out.println("6) Maximum weight matching algorithm options");
System.out.println("0) Return to main menu");
try {