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update todo

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eugenefischer
2023-04-09 13:00:41 -05:00
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@@ -615,6 +615,7 @@ the file of distinct cells may enable better simulated replication of this exper
* ~~Update graphml output to reflect current Vertex class attributes~~ DONE
* Individual well data from the SequenceRecords could be included, if there's ever a reason for it
* ~~Implement simulation of sequences being misread as other real sequence~~ DONE
* Implement redistributive heap for LEDA matching algorithm to achieve theoretical worst case of O(n(m + n log C)) where C is highest edge weight.
* Update matching metadata output options in CLI
* Add frequency distribution details to metadata output
* need to make an enum for the different distribution types and refactor the Plate class and user interfaces, also add the necessary fields to GraphWithMapData and then call if from Simulator