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remove prefiltering of singletons and saturating sequences

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eugenefischer
2022-09-21 16:09:08 -05:00
parent 9ae38bf247
commit dea4972927
1 changed files with 4 additions and 4 deletions
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8
src/main/java/Simulator.java
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@@ -53,10 +53,10 @@ public class Simulator implements GraphModificationFunctions {
if(verbose){System.out.println("All betas count: " + betaCount);} if(verbose){System.out.println("All betas count: " + betaCount);}
if(verbose){System.out.println("Well maps made");} if(verbose){System.out.println("Well maps made");}
if(verbose){System.out.println("Removing sequences present in all wells.");} // if(verbose){System.out.println("Removing sequences present in all wells.");}
filterByOccupancyThresholds(allAlphas, 1, numWells - 1); // filterByOccupancyThresholds(allAlphas, 1, numWells - 1);
filterByOccupancyThresholds(allBetas, 1, numWells - 1); // filterByOccupancyThresholds(allBetas, 1, numWells - 1);
if(verbose){System.out.println("Sequences removed");} // if(verbose){System.out.println("Sequences removed");}
int pairableAlphaCount = allAlphas.size(); int pairableAlphaCount = allAlphas.size();
if(verbose){System.out.println("Remaining alphas count: " + pairableAlphaCount);} if(verbose){System.out.println("Remaining alphas count: " + pairableAlphaCount);}
int pairableBetaCount = allBetas.size(); int pairableBetaCount = allBetas.size();